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The following papers published in 1999 have used specimens from the Australian Museum fish collection.

  1. Allen G.R. & A.P. Jenkins. 1999. Review of the Australian Freshwater gudgeons, Genus Mogurnda (Eleotridae) with descriptions of three new species. Aqua. 3(4): 141-156.
  2. Burridge, C.P. 1999. Suggestion of Synonymy for Nemadactylus and Acantholatris (Perciformes: Cirrhitoidea) in Proc. 5th Indo-Pac. Fish Conf., Noumea, 1997. Seret B. & J.-Y. Sire (eds) Paris: Soc. Fr. Ichtyol. 413-416.
  3. Castle, P.H.J., & J.E. McCosker. 1999. A new genus and two new species of myrophrine worm-eels, with comments on Muraenichthys and Scolecenchelys (Anguilliformes: Ophichthidae). Records of the Australian Museum 51(2): 113-122.
  4. Castle, P.H.J. & J.E. Randall. . Revision of Indo-Pacific garden eels (Congridae: Heterocongrinae), with descriptions of five new species. Indo-Pacific Fishes 30: 1-52.
  5. Fukui, A. 1999. Larvae of Arnoglossus debilis (Bothidae) from Hawaii. Ichth. Res. 46(2): 199-202.
  6. Gill, A.C. & J.A. Edwards. 1999. Monophyly, interrelationships and description of three new genera in the dottyback fish subfamily Pseudoplesiopinae (Teleostei :Perciformes: Pseudochromidae). Records of the Australian Museum 51(2): 141-160.
  7. Gomon, M.F. & J.W. Johnson. 1999. A new fringed stargazer (Uranoscopidae: Ichthyscopus) with descriptions of the other Australian species of the genus. Memoirs of the Queensland Museum 43(2): 597-619.
  8. Gon, O. 1999. Francis Day, Apogon ellioti and Sherlock Holmes. Ichthos. Friends of the JLB Smith Institute of Ichthyology. 62: 13-15.
  9. Grande, T. 1999. Revision of the Genus Gonorynchus Scopoli, 1777 (Teleostei : Ostariophysi) Copeia, 2: 453-469.
  10. Imamura, H., & L.W. Knapp. 1999. Thysanophrys papillaris, a new species of flathead from the Andaman Sea and Northern Australia (Scorpaeniformes: Platycephalidae) Ichthyol. Res. 46(2):179-183.
  11. Iwamoto, T., McMillan, P., & Y.N. Shcherbachev. 1999. A new grenadier, genus Caelorinchus, from Australia and New Zealand (Pisces, Gadiformes, Macrouridae). New Zealand Journal of Marine and Freshwater Research. 33: 49-54.
  12. Iwamoto, T., & A. Williams. 1999. Grenadiers (Pisces, Gadiformes) from the Continental Slope of Western and north-western Australia. Proc. Cal. Acad. Sci. 51(3): 105-243.
  13. Iwatsuki, Y., Kimura, S., Kishimoto, H. & T. Yoshino. 1999. Redescription of Gerres baconensis (Evermann & Seale, 1907), G.equulus Temminck & Schlegel, 1844 and G.oyena (Forsskål, 1775), included in the "G.oyena complex", with notes on other related species (Perciformes:Gerreidae). Ichthyological Research. 46(4): 377-396.
  14. Johnson, J.W. 1999. Annotated Checklist of the fishes of Moreton Bay, Queensland, Australia. Memoirs of the Queensland Museum 43(2): 709-762.
  15. Johnson, J.W. 1999. Designation of a lectotype for the platycephalid fish Inegocia harrissii (McCulloch). Memoirs of the Queensland Museum. 43(2): 620.
  16. Karmovskaya, E.S. 1999. Nettenchelys paxtoni sp. nova (Nettastomatidae, Anguilliformes): A New Species from the south-western Pacific Ocean (Vanuatu). Journal of Ichthology. 39(9): 795-798.
  17. Kuiter, R.H. & H. Debelius. 1999. Description of a new butterflyfish, Chaetodon andamanensis from the eastern Indian Ocean. Senckenbergiana biologica. 79(2): 231-235.
  18. Larson, H.K. 1999. A review of the mangrove goby genus Hemigobius (Gobioidei, Gobiidae, Gobionellinae). The Beagle, Records of the Museums and Art Galleries of the Northern Territory 15: 23-42.
  19. Larson, H.K. 1999. Allocation to Calamiana and redescription of the fish species Apocryptes variegatus and Vaimosa mindora (Gobioidei: Gobiidae:Gobionellinae) with description of a new species. Raffles Bulletin of Zoology. 47(1): 257-281.
  20. Last, P.R. 1999. Australian Catsharks of the genus Asymbolus (Carcharhiniforme: Scyliorhinidae). CSIRO Division of Marine Research Laboratories Report 239: 1-35.
  21. Leis J.M. & T.Trnski. 1999. Larval development of the Indo-Pacific perciform fish Centrogenys vaigiensis (Pisces:Centrogeniidae) Ichthyol. Res. 46(4): 413-418.
  22. McCosker, J.E. 1999. Pisces Anguilliformes: Deepwater snake eels (Ophichthidae) from the New Caledonia region, south-west Pacific Ocean. in Crosiner, A. (ed). Resultats des Campagnes MUSORSTOM, Volume 20, Memoires du Museum national d'Histoire naturelle:180: 571-588.
  23. McMillan, P.J. 1999. New Grenadier fishes of the genus Coryphaenoides (Pisces: Macrouridae); one from off New Zealand and one widespread in the southern Indo- West Pacific and Atlantic Oceans. New Zealand Journal of Marine and Freshwater Research. 33: 481-489.
  24. Mohlmann, M.S. & P.L. Munday. 1999. Ambleyeleotris arcupinna, a New Species of Shrimp Goby from Papua New Guinea. Rev. Fr. Aquariol. 26(1-2): 59-62.
  25. Murdy, E.O. & T. Takita. 1999. Periophthalmus spilotus, a new species of midskipper from Sumatra (Gobiidae: Oxudercinae). Ichthyological Research. 46(4): 367-370.
  26. Neira, F.J., Miskiewicz, A.G. & S.E. Tait. 1999. Development and ecology of larvae of the monotypic Australian fish family Dinolestidae. Australian journal of Zoology. 47: 37-45.
  27. Randall, J.E. 1999. Review of the Dragonets (Pisces:Callionymidae) of the Hawaiian Islands, with Descriptions of two new species. Pacific Science. 53(2): 185-207.
  28. Randall, J.E. 1999. Revision of the Indo-Pacific labrid fishes of the genus Coris, with descriptions of five new species. Indo-Pacific Fishes 29: 1-74.
  29. Randall, J.E. 1999. Revision of the Indo-Pacific labrid fishes of the genus Pseudocheilinus, with descriptions of three new species. Indo-Pacific Fishes. 28: 1-34.
  30. Randall, J.E. & J.L. Earle. 1999. Abudefduf conformis and Plectroglyphidodon sagmarius, two new damselfishes (Pomacentridae) from the Marquesas Islands. Cybium 23(4): 333-343.
  31. Randall, J.E. & T.H. Fraser. 1999. Clarification of the western Pacific Cardinalfish species Apogon trimaculatus and A. rhodopterus, with description of a similar new species. Raffles Bulletin of Zoology. 47(2): 167-633.
  32. Sasaki, K. 1999. Johnius (Johnieops) philippinus, a new sciaenid from the Philippines with a synopsis of species included in the subgenus Johnieops. Ichthyol. Res. 46(3): 271-279.
  33. Sato, K., Nakaya, K. & A.L. Stewart, 1999. A new species of the deep-water catshark genus Apristurus from New Zealand waters (Chondrichthyes: Scyliorhinidae) Journal of the Royal Society of New Zealand. 29 (4): 325-335.
  34. Schwarzhans, W. 1999. A comparative morphological treatise of recent and fossil otoliths of the order Pleuronectiformes. Piscium Catalogus: Part Otolithi piscium, Vol. 2, pp. 1-391, 1021 figs.
  35. Springer, V.G. & J.E. Randall. 1999. Ecsenius polystictus, new species of Blenniid Fish from Mentawai Islands, Indonesia, with notes on other species of Ecsenius. Revue Fr. Aquariol. 26(1-2): 39-48.
  36. Watson, R.E. 1999. Two New subgenera of Sicyopus, with a redescription of Sicyopus zosterophorum (Teleostei: Gobioidei:Sicydiinae). Aqua. 3(3): 93-104.
  37. Yoshino, T., Kon, T. & S. Okabe. 1999. Review of the genus Limnichthys (Perciformes:Creediidae) from Japan, with description of a new species. Ichthyological Research. 46(1): 82.