1. Akihito & Meguro, K. 2000. Review of the gobiid genus Cristatogobius found in Japan with description of a new species. Ichthyol. Res. 47(3): 249-261.
  2. Bellwood, D.R. & J.E. Randall. 2000. Pseudojuloides severnsi, an new species of wrasse from Indonesia and Sri Lanka (Perciformes: Labridae). J. South Asian Nat. Hist. 5(1):1-5.
  3. Burridge, C.P. 2000. Molecular genetics of cirrhitoid fishes (Perciformes: Cirrhitoidea): phylogeny, taxonomy, biogeography, and stock structure. Submitted in fulfilment of the requirements for the degree of PhD.
  4. Burridge, C.P. 2000 Biogeographic history of geminate cirrhitoids (Perciformes: Cirrhitoidea) with east-west allopatric distributions across southern Australia, gased on molecular data. Global Ecology & Biogeography. 9: 517-525.
  5. Burridge, C.P. & R.W.G. White 2000. Molecular phylogeny of the antitropical subgenus Goniistius (Perciformes: Cheilodactylidae: Cheilodactylus): evidence for multiple transequatorial divergences and non-monophyly. Biological Journal of the Linnean Society 70: 435-458.
  6. Cavalluzzi, M. 2000. Osteology, Phylogeny and Biogeography of the marine fish family Ephippidae (Perciformes, Acanthuroidei) with comments on sister group relationships. PhD thesis. Virginia Institute of Marine Science.
  7. Cole, K.S. & A.C. Gill. 2000. Specialization of the urinary bladder in two pseudoplesiopines (Teleostei: Pseudochromidae). Copeia 2000(4): 1083-1089.
  8. Colgan, D.C., Zhang, C.-G. & J.R. Paxton. 2000. Phylogenetic investigations of the Stephanoberyciformes and Beryciformes, particularly whalefishes (Euteleostei: Cetomimidae), based on partial 12S rDNA and 16S rDNA sequences. Molecular Phylogenetics and Evolution. 17(1): 15-25.
  9. Collette, B.B, and J.E. Randall. 2000. Ammodytoides leptus, an new species of sand lance (Teleostei: Ammodytidae) from Pitcairn Island. Proc. Biol Soc. Wash. 113(2): 397-400.
  10. Ferraris, C.J., McGrouther, M.A. & K.L. Parkinson. 2000. A critical review of the types and putative types of southern Asian Marine and freshwater fish species in the Australian Museum named by Francis Day. Rec. Aust. Mus. 52: 289-306.
  11. Fricke, R. 2000. Callionymidae of New Caledonia, with Remarks on Related Species and Descriptions of 10 New Species from New Caledonia, Australia, New Guinea, and Hawaii (Teleostei). Stuttgarter Beitrage zure Naturkunde Ser A. 617: 81 pp.
  12. Gill, A.C., Mooi R.D., & J.B. Hutchins. 2000. Description of a new subgenus and species of the fish genus Congrogadus Gunther from Western Australia. Rec. WA Mus. 20: 69-79.
  13. Gill, A.C., Leis, J.M. & D.S. Rennis. 2000. Pseudochromidae (dottybacks and eelblennies). Pp. 456-460, fig. in: J.M. Leis & B.M. Carson-Ewart (eds). The Larvae of Indo-Pacific Coastal Fishes. An Identification Guide to Marine Fish Larvae (Fauna Malesiana Handbooks 2). E.J. Brill, Leiden.
  14. Gon, O. 2000. The Taxonomic Status of the Cardinalfish Species Apogon niger, A. nigripinnis, A. pharaonis, A. sialis, and Related Spacies (Perciformes: Apogonidae), J.L.B. Smith Institute of Ichthyology, Special Publication. 65: 1-20.
  15. Hoshino, K. 2000. Citharoides orbitalis, a new sinstral citharid flounder from Western Australia (Pleuronectoidei, Pleuronectiformes). Ichthyological Research. 47(4): 321-326.
  16. Kailola, P.J. 2000. Six new species of fork-tailed catfishes (Pisces, Teleostei, Ariidae) from Australia and New Guinea. The Beagle, Records of the Museums and Art Galleries of the Northern Territory. 16: 127-144.
  17. Karmovskaya, E.S. & J.R. Paxton. 2000. Revision of the Australian Congrid Eels of the genus Gnathophis (Family Congridae), with descriptions of six new species. J. Ichthyol. 40 Suppl. 1. S1-S14.
  18. Leis, J.M. and B.M. Carson-Ewart. (eds). 2000. The larvae of Indo-Pacific coastal fishes. An identification guide to marine fish larvae. (Fauna Malesiana Handbooks 2). E.J. Brill, Leiden. 870 pp.
  19. Mooi, R.D. 2000. Review of New Zealand bullseyes (Perciformes: Pempheridae). NZ Journal of Marine and Freshwater Research. 34: 87-102.
  20. Motomura, H., Iwatsuki, Y., Kimura, S. & T. Yoshino. 2000. Redescription of Polydactylus macrochir (Gunther, 1867), a senior synonym of P. sheridani (Macleay,1884) (Perciformes: Polynemidae). Icthyol. Res. 47(4): 327-333.
  21. Motomura, H., Satapoomin, U. & Y. Iwatsuki. 2000. A new record of the threadfin, Filimanus perplexa Feltes, 1991 (Perciformes: Polynemidae) from the Andaman Sea, Thailand. Phuket mar. bio. Cent. Res. Bull. 63: 17-20.
  22. Nielsen, J.G. & N.R. Merrett. 2000. Revision of the Cosmopolitan Deep-Sea Genus Bassozetus (Pisces: Ophidiidae) with Two New Species. Reprint from. Galathea Report Vol 18 Scientific results of The Danish Deep-Sea Expedition Round the World 1950-52.
  23. Parin, N.V & I.B. Shakhovskoy. 2000. A review of the flying fish genus Exocoetus (Exocoetidae) with descriptions of two new species from the southern Pacific Ocean. J. Ichthyol. 40 Suppl. 1: S31-S63.
  24. Prirodina, V.P. 2000. On the systematic position of the littoral and deep-sea species of the genus Harpagifer (Harpagiferidae, Notothenioidei) from Macquarie Island, with description of two new species. Journal of Ichthyology. 40(4): 438-445.
  25. Randall, J.E. 2000. Revision of the Indo-Pacific labrid fishes of the genus Stethojulis, with descriptions of two new species. Indo-Pacific Fishes 31: 1-42.
  26. Randall, J.E., and B.A. Carlson. 2000. Pygmy Angelfish Centropyge woodheadi Kuiter, 1998, a Synonym of C.heraldi Woods and Schultz, 1953. Aqua. 4(1): 1-4.
  27. Randall, J.E. & J. Johnson. 2000. Perca lineata and P.vittata established as valid species of Plectorhinchus (Perciformes: Haemulidae). Memoirs of the Queensland Museum 45(2): 477-482.
  28. Randall, J.E. & U. Satapoomin. 2000. Cephalopholis polyspila, a new species of grouper (Perciformes: Serranidae: Epinephelinae) from south-western Thailand and Sumatra. Phuket Mar. Bio. Cent. Res. Bull. 63: 1-8.
  29. Russell, B.C. (2000) Review of the Southern temperate fish family Aplodactylidae (Pisces:Perciformes). Journal of Natural History. 34: 2157-2171.
  30. Sazonov, Y.I. & Y.N. Schcherbachev. 2000. A Review of the Indian Ocean species from the genus Gadella (Gadiformes, Moridae), with a description of two new species. J. Ichthyol. 40 Suppl. 1. S64-S73.
  31. Springer, V.G. & R.A. Fricke. 2000. Description of two new blenniid fish species: Entomacrodus lemurua from the western Indian Ocean and E.williamsi from the western Pacific Ocean. Proc. Biol Soc. Wash. 113(2): 386-396.
  32. Winterbottom, R. 2000. Four new species of Trimma (Gobiidae), from the Indian and Western Pacific Oceans. Aqua. 4(2): 57-66.